From 94d3e79a8617f88dc0219cfdeedfa3147833719d Mon Sep 17 00:00:00 2001
From: Adrian Kummerlaender
Date: Mon, 24 Jun 2019 14:43:36 +0200
Subject: Initialize at openlb-1-3
---
examples/laminar/bstep3d/Makefile | 105 ++++++++++
examples/laminar/bstep3d/bstep3d.cpp | 327 ++++++++++++++++++++++++++++++++
examples/laminar/bstep3d/definitions.mk | 30 +++
examples/laminar/bstep3d/module.mk | 29 +++
4 files changed, 491 insertions(+)
create mode 100644 examples/laminar/bstep3d/Makefile
create mode 100644 examples/laminar/bstep3d/bstep3d.cpp
create mode 100644 examples/laminar/bstep3d/definitions.mk
create mode 100644 examples/laminar/bstep3d/module.mk
(limited to 'examples/laminar/bstep3d')
diff --git a/examples/laminar/bstep3d/Makefile b/examples/laminar/bstep3d/Makefile
new file mode 100644
index 0000000..a953954
--- /dev/null
+++ b/examples/laminar/bstep3d/Makefile
@@ -0,0 +1,105 @@
+# This file is part of the OpenLB library
+#
+# Copyright (C) 2007 Mathias Krause
+# E-mail contact: info@openlb.net
+# The most recent release of OpenLB can be downloaded at
+#
+#
+# This program is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation; either version 2
+# of the License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public
+# License along with this program; if not, write to the Free
+# Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+# Boston, MA 02110-1301, USA.
+
+###########################################################################
+## definitions
+
+include definitions.mk
+
+include $(ROOT)/global.mk
+
+OBJECTS := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.o))
+DEPS := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.d))
+
+###########################################################################
+## all
+
+all : depend compile link
+
+
+###########################################################################
+## dependencies
+
+depend : $(DEPS)
+
+$(PWD)/%.d : %.cpp
+ @echo Create dependencies for $<
+ @$(SHELL) -ec '$(CXX) -M $(CXXFLAGS) $(IDIR) $< \
+ | sed -e "s!$*\.o!$(PWD)\/$*\.o!1" > .tmpfile; \
+ cp -f .tmpfile $@;'
+
+###########################################################################
+## compile
+
+compile : $(OBJECTS)
+
+$(PWD)/%.o: %.cpp
+ @echo Compile $<
+ $(CXX) $(CXXFLAGS) $(IDIR) -c $< -o $@
+
+###########################################################################
+## clean
+
+clean : cleanrub cleanobj cleandep
+
+cleanrub:
+ @echo Clean rubbish files
+ @rm -f *~ core .tmpfile tmp/*.* $(OUTPUT)
+ @rm -f tmp/vtkData/*.* tmp/vtkData/data/*.* tmp/imageData/*.* tmp/gnuplotData/*.* tmp/gnuplotData/data/*.*
+
+cleanobj:
+ @echo Clean object files
+ @rm -f $(OBJECTS)
+
+cleandep:
+ @echo Clean dependencies files
+ @rm -f $(DEPS)
+
+cleanbuild:
+ @cd $(ROOT); \
+ $(MAKE) cleanlib;
+
+###########################################################################
+## update lib
+
+$(ROOT)/$(LIBDIR)/lib$(LIB).a :
+ @cd $(ROOT); \
+ $(MAKE) all
+
+###########################################################################
+## link
+
+link: $(OUTPUT)
+
+$(OUTPUT): $(OBJECTS) $(ROOT)/$(LIBDIR)/lib$(LIB).a
+ @echo Link $@
+ $(CXX) $(foreach file, $(SRC), $(file:.cpp=.o)) $(LDFLAGS) -L$(ROOT)/$(LIBDIR) -l$(LIB) -lz -o $@
+
+###########################################################################
+## include dependencies
+
+ifneq "$(strip $(wildcard *.d))" ""
+ include $(foreach file,$(DEPS),$(file))
+endif
+
+###########################################################################
+###########################################################################
diff --git a/examples/laminar/bstep3d/bstep3d.cpp b/examples/laminar/bstep3d/bstep3d.cpp
new file mode 100644
index 0000000..fcdb193
--- /dev/null
+++ b/examples/laminar/bstep3d/bstep3d.cpp
@@ -0,0 +1,327 @@
+/* Lattice Boltzmann sample, written in C++, using the OpenLB
+ * library
+ *
+ * Copyright (C) 2006, 2007, 2012 Jonas Latt, Mathias J. Krause
+ * E-mail contact: info@openlb.net
+ * The most recent release of OpenLB can be downloaded at
+ *
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public
+ * License along with this program; if not, write to the Free
+ * Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+ * Boston, MA 02110-1301, USA.
+ */
+
+/* bstep3d.cpp:
+ * The implementation of a backward facing step. It is furthermore
+ * shown how to use checkpointing to save the state of the
+ * simulation regularly.
+ */
+
+
+#include "olb3D.h"
+#ifndef OLB_PRECOMPILED // Unless precompiled version is used,
+#include "olb3D.hh" // include full template code
+#endif
+#include
+#include
+#include
+#include
+
+using namespace olb;
+using namespace olb::descriptors;
+using namespace olb::graphics;
+using namespace std;
+
+typedef double T;
+#define DESCRIPTOR D3Q19<>
+
+
+// Parameters for the simulation setup
+const T lx1 = 5.0; // length of step
+const T ly1 = 0.75; // height of step
+const T lx0 = 18.0; // length of channel
+const T ly0 = 1.5; // height of channel
+const T lz0 = 1.5; // width of channel
+const int N = 20; // resolution of the model
+const int M = 25; // resolution of the model
+const T maxPhysT = 40.; // max. simulation time in s, SI unit
+
+
+// Stores geometry information in form of material numbers
+void prepareGeometry( UnitConverter const& converter,
+ SuperGeometry3D& superGeometry )
+{
+
+ OstreamManager clout( std::cout,"prepareGeometry" );
+ clout << "Prepare Geometry ..." << std::endl;
+
+ superGeometry.rename( 0,2 );
+
+ superGeometry.rename( 2,1,1,1,1 );
+
+ Vector extend( lx1, ly1, lz0 );
+ Vector origin;
+ IndicatorCuboid3D cuboid2( extend, origin );
+
+ superGeometry.rename( 1,2,cuboid2 );
+
+ // Set material number for inflow
+ extend = {2*converter.getConversionFactorLength(), ly0, lz0};
+ origin[0] -= converter.getConversionFactorLength()/2.;
+ IndicatorCuboid3D inflow( extend, origin );
+ superGeometry.rename( 2,3,1,inflow );
+
+ // Set material number for outflow
+ origin[0] = lx0 - converter.getConversionFactorLength()*1.5;
+ IndicatorCuboid3D outflow( extend, origin );
+ superGeometry.rename( 2,4,1,outflow );
+
+ // Removes all not needed boundary voxels outside the surface
+ superGeometry.clean();
+ // Removes all not needed boundary voxels inside the surface
+ superGeometry.innerClean();
+ superGeometry.checkForErrors();
+
+ superGeometry.print();
+
+ clout << "Prepare Geometry ... OK" << std::endl;
+}
+
+// Set up the geometry of the simulation
+void prepareLattice( UnitConverter const& converter,
+ SuperLattice3D& sLattice,
+ Dynamics& bulkDynamics,
+ sOnLatticeBoundaryCondition3D& bc,
+ SuperGeometry3D& superGeometry )
+{
+
+ OstreamManager clout( std::cout,"prepareLattice" );
+ clout << "Prepare Lattice ..." << endl;
+
+ const T omega = converter.getLatticeRelaxationFrequency();
+
+ // Material=0 -->do nothing
+ sLattice.defineDynamics( superGeometry, 0, &instances::getNoDynamics() );
+
+ // Material=1 -->bulk dynamics
+ // Material=3 -->bulk dynamics (inflow)
+ // Material=4 -->bulk dynamics (outflow)
+ auto bulkIndicator = superGeometry.getMaterialIndicator({1, 3, 4});
+ sLattice.defineDynamics( bulkIndicator, &bulkDynamics );
+
+ // Material=2 -->bounce back
+ sLattice.defineDynamics( superGeometry, 2, &instances::getBounceBack() );
+
+ // Setting of the boundary conditions
+ bc.addVelocityBoundary( superGeometry, 3, omega );
+ bc.addPressureBoundary( superGeometry, 4, omega );
+
+ // Initial conditions
+ AnalyticalConst3D ux( 0. );
+ AnalyticalConst3D uy( 0. );
+ AnalyticalConst3D uz( 0. );
+ AnalyticalConst3D rho( 1. );
+ AnalyticalComposed3D u( ux,uy,uz );
+
+ //Initialize all values of distribution functions to their local equilibrium
+ sLattice.defineRhoU( bulkIndicator, rho, u );
+ sLattice.iniEquilibrium( bulkIndicator, rho, u );
+
+ // Make the lattice ready for simulation
+ sLattice.initialize();
+
+ clout << "Prepare Lattice ... OK" << std::endl;
+}
+
+// Generates a slowly increasing inflow for the first iTMaxStart timesteps
+void setBoundaryValues( UnitConverter const& converter,
+ SuperLattice3D& sLattice, int iT,
+ SuperGeometry3D& superGeometry )
+{
+
+ OstreamManager clout( std::cout,"setBoundaryValues" );
+
+ // No of time steps for smooth start-up
+ int iTmaxStart = converter.getLatticeTime( maxPhysT*0.2 );
+ int iTupdate = 5;
+
+ if ( iT%iTupdate==0 && iT<= iTmaxStart ) {
+ // Smooth start curve, sinus
+ // SinusStartScale StartScale(iTmaxStart, T(1));
+
+ // Smooth start curve, polynomial
+ PolynomialStartScale startScale( iTmaxStart, T( 1 ) );
+
+ // Creates and sets the Poiseuille inflow profile using functors
+ int iTvec[1]= {iT};
+ T frac[1]= {};
+ startScale( frac,iTvec );
+ std::vector maxVelocity( 3,0 );
+ maxVelocity[0] = 2.25*frac[0]*converter.getCharLatticeVelocity();
+
+ T distance2Wall = converter.getConversionFactorLength()/2.;
+ RectanglePoiseuille3D poiseuilleU( superGeometry, 3, maxVelocity, distance2Wall, distance2Wall, distance2Wall );
+ sLattice.defineU( superGeometry, 3, poiseuilleU );
+
+ clout << "step=" << iT << "; maxVel=" << maxVelocity[0] << std::endl;
+ }
+}
+
+// Output to console and files
+void getResults( SuperLattice3D& sLattice,
+ UnitConverter const& converter,
+ BlockReduction3D2D& planeReduction,
+ int iT,
+ SuperGeometry3D& superGeometry, Timer& timer)
+{
+ OstreamManager clout( std::cout,"getResults" );
+
+ SuperVTMwriter3D vtmWriter( "bstep3d" );
+ SuperLatticePhysVelocity3D velocity( sLattice, converter );
+ SuperLatticePhysPressure3D pressure( sLattice, converter );
+ vtmWriter.addFunctor( velocity );
+ vtmWriter.addFunctor( pressure );
+
+ const int vtkIter = converter.getLatticeTime( 0.2 );
+ const int statIter = converter.getLatticeTime( 0.1 );
+ const int saveIter = converter.getLatticeTime( 1. );
+
+ if ( iT==0 ) {
+ // Writes the geometry, cuboid no. and rank no. as vti file for visualization
+ SuperLatticeGeometry3D geometry( sLattice, superGeometry );
+ SuperLatticeCuboid3D cuboid( sLattice );
+ SuperLatticeRank3D rank( sLattice );
+ vtmWriter.write( geometry );
+ vtmWriter.write( cuboid );
+ vtmWriter.write( rank );
+ vtmWriter.createMasterFile();
+ }
+
+ // Writes the ppm files
+ if ( iT%vtkIter==0 ) {
+ vtmWriter.write( iT );
+ planeReduction.update();
+ // write output as JPEG
+ heatmap::write(planeReduction, iT);
+ }
+
+ // Writes output on the console
+ if ( iT%statIter==0 && iT>=0 ) {
+ // Timer console output
+ timer.update( iT );
+ timer.printStep();
+
+ // Lattice statistics console output
+ sLattice.getStatistics().print( iT,converter.getPhysTime( iT ) );
+ }
+
+ // Saves lattice data
+ if ( iT%( saveIter/2 )==0 && iT>0 ) {
+ clout << "Checkpointing the system at t=" << iT << endl;
+ sLattice.save( "bstep3d.checkpoint" );
+ // The data can be reloaded using
+ // sLattice.load("bstep3d.checkpoint");
+ }
+}
+
+int main( int argc, char* argv[] )
+{
+
+ // === 1st Step: Initialization ===
+ olbInit( &argc, &argv );
+ singleton::directories().setOutputDir( "./tmp/" );
+ OstreamManager clout( std::cout,"main" );
+ // display messages from every single mpi process
+ //clout.setMultiOutput(true);
+
+ UnitConverter converter(
+ (T) 1./N, // physDeltaX: spacing between two lattice cells in __m__
+ (T) 1./(M*N), // physDeltaT: time step in __s__
+ (T) 1., // charPhysLength: reference length of simulation geometry
+ (T) 1., // charPhysVelocity: maximal/highest expected velocity during simulation in __m / s__
+ (T) 1./100., // physViscosity: physical kinematic viscosity in __m^2 / s__
+ (T) 1. // physDensity: physical density in __kg / m^3__
+ );
+
+ // Prints the converter log as console output
+ converter.print();
+ // Writes the converter log in a file
+ converter.write("bstep3d");
+
+ // === 2nd Step: Prepare Geometry ===
+ Vector extend( lx0, ly0, lz0 );
+ Vector origin;
+ IndicatorCuboid3D cuboid( extend, origin );
+
+ // Instantiation of a cuboidGeometry with weights
+#ifdef PARALLEL_MODE_MPI
+ const int noOfCuboids = singleton::mpi().getSize();
+#else
+ const int noOfCuboids = 7;
+#endif
+ CuboidGeometry3D cuboidGeometry( cuboid, converter.getConversionFactorLength(), noOfCuboids );
+
+ // Instantiation of a loadBalancer
+ HeuristicLoadBalancer loadBalancer( cuboidGeometry );
+
+ // Instantiation of a superGeometry
+ SuperGeometry3D superGeometry( cuboidGeometry, loadBalancer, 2 );
+
+ prepareGeometry( converter, superGeometry );
+
+ // === 3rd Step: Prepare Lattice ===
+ SuperLattice3D sLattice( superGeometry );
+
+ BGKdynamics bulkDynamics (
+ converter.getLatticeRelaxationFrequency(),
+ instances::getBulkMomenta()
+ );
+
+ // choose between local and non-local boundary condition
+ sOnLatticeBoundaryCondition3D sBoundaryCondition( sLattice );
+ // createInterpBoundaryCondition3D(sBoundaryCondition);
+ createLocalBoundaryCondition3D( sBoundaryCondition );
+
+ prepareLattice( converter, sLattice, bulkDynamics, sBoundaryCondition, superGeometry );
+
+ // === 4th Step: Main Loop with Timer ===
+ clout << "starting simulation..." << endl;
+ Timer timer( converter.getLatticeTime( maxPhysT ), superGeometry.getStatistics().getNvoxel() );
+ timer.start();
+
+ // Set up persistent measuring functors for result extraction
+ SuperLatticePhysVelocity3D velocity( sLattice, converter );
+ SuperEuklidNorm3D normVel( velocity );
+
+ BlockReduction3D2D planeReduction(
+ normVel,
+ Hyperplane3D().centeredIn(cuboidGeometry.getMotherCuboid()).normalTo({0,0,1}),
+ 600,
+ BlockDataSyncMode::ReduceOnly);
+
+ for ( int iT = 0; iT < converter.getLatticeTime( maxPhysT ); ++iT ) {
+
+ // === 5th Step: Definition of Initial and Boundary Conditions ===
+ setBoundaryValues( converter, sLattice, iT, superGeometry );
+
+ // === 6th Step: Collide and Stream Execution ===
+ sLattice.collideAndStream();
+
+ // === 7th Step: Computation and Output of the Results ===
+ getResults( sLattice, converter, planeReduction, iT, superGeometry, timer );
+ }
+
+ timer.stop();
+ timer.printSummary();
+}
diff --git a/examples/laminar/bstep3d/definitions.mk b/examples/laminar/bstep3d/definitions.mk
new file mode 100644
index 0000000..9fc7860
--- /dev/null
+++ b/examples/laminar/bstep3d/definitions.mk
@@ -0,0 +1,30 @@
+# This file is part of the OpenLB library
+#
+# Copyright (C) 2007 Mathias Krause
+# E-mail contact: info@openlb.net
+# The most recent release of OpenLB can be downloaded at
+#
+#
+# This program is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation; either version 2
+# of the License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public
+# License along with this program; if not, write to the Free
+# Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+# Boston, MA 02110-1301, USA.
+
+
+###########################################################################
+###########################################################################
+## DEFINITIONS TO BE CHANGED
+
+ROOT := ../../..
+SRC := bstep3d.cpp
+OUTPUT := bstep3d
diff --git a/examples/laminar/bstep3d/module.mk b/examples/laminar/bstep3d/module.mk
new file mode 100644
index 0000000..1190482
--- /dev/null
+++ b/examples/laminar/bstep3d/module.mk
@@ -0,0 +1,29 @@
+# This file is part of the OpenLB library
+#
+# Copyright (C) 2017 Markus Mohrhard
+# E-mail contact: info@openlb.net
+# The most recent release of OpenLB can be downloaded at
+#
+#
+# This program is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation; either version 2
+# of the License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public
+# License along with this program; if not, write to the Free
+# Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+# Boston, MA 02110-1301, USA.
+
+current_dir := $(dir $(word $(words $(MAKEFILE_LIST)),$(MAKEFILE_LIST)))
+
+include global.mk
+include rules.mk
+include $(addsuffix definitions.mk, $(current_dir))
+
+$(eval $(call sample,$(current_dir)$(OUTPUT),$(addprefix $(current_dir), $(SRC))))
--
cgit v1.2.3