From 94d3e79a8617f88dc0219cfdeedfa3147833719d Mon Sep 17 00:00:00 2001 From: Adrian Kummerlaender Date: Mon, 24 Jun 2019 14:43:36 +0200 Subject: Initialize at openlb-1-3 --- examples/porousMedia/porousPoiseuille2d/Makefile | 105 +++++ .../porousMedia/porousPoiseuille2d/definitions.mk | 30 ++ examples/porousMedia/porousPoiseuille2d/input.xml | 21 + examples/porousMedia/porousPoiseuille2d/module.mk | 29 ++ .../porousPoiseuille2d/porousPoiseuille2d.cpp | 478 ++++++++++++++++++++ examples/porousMedia/porousPoiseuille3d/Makefile | 105 +++++ .../porousMedia/porousPoiseuille3d/definitions.mk | 30 ++ examples/porousMedia/porousPoiseuille3d/module.mk | 29 ++ .../porousPoiseuille3d/porousPoiseuille3d.cpp | 484 +++++++++++++++++++++ 9 files changed, 1311 insertions(+) create mode 100644 examples/porousMedia/porousPoiseuille2d/Makefile create mode 100644 examples/porousMedia/porousPoiseuille2d/definitions.mk create mode 100644 examples/porousMedia/porousPoiseuille2d/input.xml create mode 100644 examples/porousMedia/porousPoiseuille2d/module.mk create mode 100644 examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp create mode 100644 examples/porousMedia/porousPoiseuille3d/Makefile create mode 100644 examples/porousMedia/porousPoiseuille3d/definitions.mk create mode 100644 examples/porousMedia/porousPoiseuille3d/module.mk create mode 100644 examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp (limited to 'examples/porousMedia') diff --git a/examples/porousMedia/porousPoiseuille2d/Makefile b/examples/porousMedia/porousPoiseuille2d/Makefile new file mode 100644 index 0000000..a953954 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille2d/Makefile @@ -0,0 +1,105 @@ +# This file is part of the OpenLB library +# +# Copyright (C) 2007 Mathias Krause +# E-mail contact: info@openlb.net +# The most recent release of OpenLB can be downloaded at +# +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation; either version 2 +# of the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public +# License along with this program; if not, write to the Free +# Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +# Boston, MA 02110-1301, USA. + +########################################################################### +## definitions + +include definitions.mk + +include $(ROOT)/global.mk + +OBJECTS := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.o)) +DEPS := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.d)) + +########################################################################### +## all + +all : depend compile link + + +########################################################################### +## dependencies + +depend : $(DEPS) + +$(PWD)/%.d : %.cpp + @echo Create dependencies for $< + @$(SHELL) -ec '$(CXX) -M $(CXXFLAGS) $(IDIR) $< \ + | sed -e "s!$*\.o!$(PWD)\/$*\.o!1" > .tmpfile; \ + cp -f .tmpfile $@;' + +########################################################################### +## compile + +compile : $(OBJECTS) + +$(PWD)/%.o: %.cpp + @echo Compile $< + $(CXX) $(CXXFLAGS) $(IDIR) -c $< -o $@ + +########################################################################### +## clean + +clean : cleanrub cleanobj cleandep + +cleanrub: + @echo Clean rubbish files + @rm -f *~ core .tmpfile tmp/*.* $(OUTPUT) + @rm -f tmp/vtkData/*.* tmp/vtkData/data/*.* tmp/imageData/*.* tmp/gnuplotData/*.* tmp/gnuplotData/data/*.* + +cleanobj: + @echo Clean object files + @rm -f $(OBJECTS) + +cleandep: + @echo Clean dependencies files + @rm -f $(DEPS) + +cleanbuild: + @cd $(ROOT); \ + $(MAKE) cleanlib; + +########################################################################### +## update lib + +$(ROOT)/$(LIBDIR)/lib$(LIB).a : + @cd $(ROOT); \ + $(MAKE) all + +########################################################################### +## link + +link: $(OUTPUT) + +$(OUTPUT): $(OBJECTS) $(ROOT)/$(LIBDIR)/lib$(LIB).a + @echo Link $@ + $(CXX) $(foreach file, $(SRC), $(file:.cpp=.o)) $(LDFLAGS) -L$(ROOT)/$(LIBDIR) -l$(LIB) -lz -o $@ + +########################################################################### +## include dependencies + +ifneq "$(strip $(wildcard *.d))" "" + include $(foreach file,$(DEPS),$(file)) +endif + +########################################################################### +########################################################################### diff --git a/examples/porousMedia/porousPoiseuille2d/definitions.mk b/examples/porousMedia/porousPoiseuille2d/definitions.mk new file mode 100644 index 0000000..55a8413 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille2d/definitions.mk @@ -0,0 +1,30 @@ +# This file is part of the OpenLB library +# +# Copyright (C) 2007 Mathias Krause +# E-mail contact: info@openlb.net +# The most recent release of OpenLB can be downloaded at +# +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation; either version 2 +# of the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public +# License along with this program; if not, write to the Free +# Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +# Boston, MA 02110-1301, USA. + + +########################################################################### +########################################################################### +## DEFINITIONS TO BE CHANGED + +ROOT := ../../.. +SRC := porousPoiseuille2d.cpp +OUTPUT := porousPoiseuille2d diff --git a/examples/porousMedia/porousPoiseuille2d/input.xml b/examples/porousMedia/porousPoiseuille2d/input.xml new file mode 100644 index 0000000..d497d40 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille2d/input.xml @@ -0,0 +1,21 @@ + + +1 +1 +200 +0.8 +.1 +1e-4 + + +0.1 +1e-2 + + + +1e-7 + + diff --git a/examples/porousMedia/porousPoiseuille2d/module.mk b/examples/porousMedia/porousPoiseuille2d/module.mk new file mode 100644 index 0000000..1190482 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille2d/module.mk @@ -0,0 +1,29 @@ +# This file is part of the OpenLB library +# +# Copyright (C) 2017 Markus Mohrhard +# E-mail contact: info@openlb.net +# The most recent release of OpenLB can be downloaded at +# +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation; either version 2 +# of the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public +# License along with this program; if not, write to the Free +# Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +# Boston, MA 02110-1301, USA. + +current_dir := $(dir $(word $(words $(MAKEFILE_LIST)),$(MAKEFILE_LIST))) + +include global.mk +include rules.mk +include $(addsuffix definitions.mk, $(current_dir)) + +$(eval $(call sample,$(current_dir)$(OUTPUT),$(addprefix $(current_dir), $(SRC)))) diff --git a/examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp b/examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp new file mode 100644 index 0000000..91f3456 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp @@ -0,0 +1,478 @@ +/* Lattice Boltzmann sample, written in C++, using the OpenLB + * library + * + * Copyright (C) 2017 Davide Dapelo, Mathias J. Krause + * E-mail contact: info@openlb.net + * The most recent release of OpenLB can be downloaded at + * + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program; if not, write to the Free + * Software Foundation, Inc., 51 Franklin Street, Fifth Floor, + * Boston, MA 02110-1301, USA. + */ + +/* porousPoiseuille2d.cpp: + * Poiseuille flow through porous media. + * This implementation is the reproduction of the Guo and Zhao (2002)'s + * benchmark example A. The theoretical maximum velocity is calculated + * as in Equation 21, and the velocity profile as in Equation 23 of + * the original reference. + */ + +#include "olb2D.h" +#include "olb2D.hh" // use only generic version! + +#include +#include +#include +#include +#include + +using namespace olb; +using namespace olb::descriptors; +using namespace olb::graphics; +using namespace std; + +typedef double T; +#define DESCRIPTOR GuoZhaoD2Q9Descriptor +#define DYNAMICS GuoZhaoBGKdynamics +//#define DYNAMICS SmagorinskyGuoZhaoBGKdynamics + +/// Functional to calculate velocity profile on pipe with porous media. +template +class PorousPipe2D : public AnalyticalF2D { +protected: + std::vector axisPoint; + std::vector axisDirection; + T radius, rFactor, u0; + +public: + PorousPipe2D(std::vector axisPoint_, std::vector axisDirection_, T radius_, T rFactor_, T u0_); + bool operator()(T output[], const T x[]) override; +}; + +template +PorousPipe2D::PorousPipe2D(std::vector axisPoint_, std::vector axisDirection_, T radius_, T rFactor_, T u0_) + : AnalyticalF2D(2) +{ + this->getName() = "PorousPipe2D"; + axisPoint.resize(2); + axisDirection.resize(2); + for (int i = 0; i < 2; ++i) { + axisDirection[i] = axisDirection_[i]; + axisPoint[i] = axisPoint_[i]; + } + radius = radius_; + rFactor = rFactor_; + u0 = u0_; +} + +template +bool PorousPipe2D::operator()(T output[], const T x[]) +{ + output[0] = axisDirection[0]*u0*(cosh(rFactor*radius) - cosh(rFactor*x[1] - rFactor*radius))/(cosh(rFactor*radius) - 1); + output[1] = axisDirection[1]*u0*(cosh(rFactor*radius) - cosh(rFactor*x[0] - rFactor*radius))/(cosh(rFactor*radius) - 1); + + return true; +} + +/// Stores geometry information in form of material numbers +void prepareGeometry(UnitConverter const& converter, T lx, T ly, + SuperGeometry2D& superGeometry) +{ + + OstreamManager clout(std::cout,"prepareGeometry"); + clout << "Prepare Geometry ..." << std::endl; + + superGeometry.rename(0,2); + + std::vector extend(2,T()); + extend[0] = lx; + extend[1] = ly - 1.8*converter.getPhysLength(1); + std::vector origin(2,T()); + origin[1] = 0.9*converter.getPhysLength(1); + IndicatorCuboid2D cuboid2(extend, origin); + + superGeometry.rename(2,1,cuboid2); + + /// Removes all not needed boundary voxels outside the surface + superGeometry.clean(); + /// Removes all not needed boundary voxels inside the surface + superGeometry.innerClean(); + superGeometry.checkForErrors(); + + superGeometry.print(); + + clout << "Prepare Geometry ... OK" << std::endl; +} + +/// Set up the geometry of the simulation +void prepareLattice(UnitConverter const& converter, T lx, T ly, + T epsilonIn, T KIn, T bodyForceIn, + SuperLattice2D& sLattice, + Dynamics& bulkDynamics, + sOnLatticeBoundaryCondition2D& sBoundaryCondition, + SuperGuoZhaoInstantiator2D >& sGuoZhaoInstantiator, + SuperGeometry2D& superGeometry ) +{ + + OstreamManager clout(std::cout,"prepareLattice"); + clout << "Prepare Lattice ..." << std::endl; + + T omega = converter.getLatticeRelaxationFrequency(); + + /// Material=0 -->do nothing + sLattice.defineDynamics(superGeometry, 0, &instances::getNoDynamics()); + + /// Material=1 -->bulk dynamics + sLattice.defineDynamics(superGeometry, 1, &bulkDynamics); + + /// Material=2 -->bulk dynamics + sLattice.defineDynamics(superGeometry, 2, &bulkDynamics); + + /// Setting of the boundary conditions + sBoundaryCondition.addVelocityBoundary(superGeometry, 2, omega); + + /// Initial conditions + std::vector epsilonValue(1, epsilonIn); + AnalyticalConst2D epsilon(epsilonValue); + + std::vector KValue(1, KIn); + AnalyticalConst2D K(KValue); + + std::vector bodyForceValue (2, (T)0); + bodyForceValue[0] = bodyForceIn; + AnalyticalConst2D bodyForce(bodyForceValue); + + // Initialize porosity + sGuoZhaoInstantiator.defineEpsilon(superGeometry, 1, epsilon); + sGuoZhaoInstantiator.defineEpsilon(superGeometry, 2, epsilon); + + sGuoZhaoInstantiator.defineK(converter, superGeometry, 1, K); + sGuoZhaoInstantiator.defineK(converter, superGeometry, 2, K); + + sGuoZhaoInstantiator.defineNu(converter, superGeometry, 1); + sGuoZhaoInstantiator.defineNu(converter, superGeometry, 2); + + sGuoZhaoInstantiator.defineBodyForce(converter, superGeometry, 1, bodyForce); + sGuoZhaoInstantiator.defineBodyForce(converter, superGeometry, 2, bodyForce); + + /// Make the lattice ready for simulation + clout << "Ready to initialize the lattice..." << std::endl; + sLattice.initialize(); + + clout << "Prepare Lattice ... OK" << std::endl; +} + +/// Compute error norms +void error( SuperGeometry2D& superGeometry, + SuperLattice2D& sLattice, + UnitConverter const& converter, + Dynamics& bulkDynamics, + AnalyticalF2D& uSol) { + + OstreamManager clout( std::cout,"error" ); + + int input[1] = { }; + T result[1] = { }; + + SuperLatticePhysVelocity2D u( sLattice,converter ); + auto indicatorF = superGeometry.getMaterialIndicator(1); + + // velocity error + SuperAbsoluteErrorL1Norm2D absVelocityErrorNormL1(u, uSol, indicatorF); + absVelocityErrorNormL1(result, input); + clout << "velocity-L1-error(abs)=" << result[0]; + SuperRelativeErrorL1Norm2D relVelocityErrorNormL1(u, uSol, indicatorF); + relVelocityErrorNormL1(result, input); + clout << "; velocity-L1-error(rel)=" << result[0] << std::endl; + + SuperAbsoluteErrorL2Norm2D absVelocityErrorNormL2(u, uSol, indicatorF); + absVelocityErrorNormL2(result, input); + clout << "velocity-L2-error(abs)=" << result[0]; + SuperRelativeErrorL2Norm2D relVelocityErrorNormL2(u, uSol, indicatorF); + relVelocityErrorNormL2(result, input); + clout << "; velocity-L2-error(rel)=" << result[0] << std::endl; + + SuperAbsoluteErrorLinfNorm2D absVelocityErrorNormLinf(u, uSol, indicatorF); + absVelocityErrorNormLinf(result, input); + clout << "velocity-Linf-error(abs)=" << result[0] << std::endl; +} + +/// Output to console and files +void getResults(SuperLattice2D& sLattice, Dynamics& bulkDynamics, + UnitConverter const& converter, T lx, T ly, T G, T K, T nu, T epsilon, T maxPhysT, int iT, int numOfIterations, + SuperGeometry2D& superGeometry, Timer& timer, bool hasConverged) +{ + + OstreamManager clout(std::cout,"getResults"); + + SuperVTMwriter2D vtkWriter("porousPoiseuille2d"); + SuperLatticePhysVelocity2D velocity(sLattice, converter); + SuperLatticePhysPressure2D pressure(sLattice, converter); +// SuperLatticeEpsilon2D epsilonVTM(sLattice, converter); +// SuperLatticePhysK2D KVTM(sLattice, converter); +// SuperLatticePhysBodyForce2D bodyForce(sLattice, converter); + vtkWriter.addFunctor( velocity ); + vtkWriter.addFunctor( pressure ); +// vtkWriter.addFunctor( epsilonVTM ); +// vtkWriter.addFunctor( KVTM ); +// vtkWriter.addFunctor( bodyForce ); + + const int vtkIter = converter.getLatticeTime(maxPhysT/numOfIterations); + const int statIter = converter.getLatticeTime(maxPhysT/numOfIterations); + + static Gnuplot gplot_uCentre( "uCentre" ); + static Gnuplot gplot_profile( "profile" ); + + if (iT==0) { + /// Writes the geometry, cuboid no. and rank no. as vti file for visualization + SuperLatticeGeometry2D geometry(sLattice, superGeometry); + SuperLatticeCuboid2D cuboid(sLattice); + SuperLatticeRank2D rank(sLattice); + superGeometry.rename(0,2); + vtkWriter.write(geometry); + vtkWriter.write(cuboid); + vtkWriter.write(rank); + + vtkWriter.createMasterFile(); + } + + /// Writes the vtk files and profile text file + T Ly = converter.getLatticeLength(ly); + AnalyticalFfromSuperF2D intpolateVelocity( velocity, true ); + T centre[2] = {converter.getCharPhysLength()/2, converter.getCharPhysLength()/2}; + T uCentre[2]; + intpolateVelocity(uCentre, centre); + T r = sqrt(epsilon/K); + T dx = converter.getPhysDeltaX(); + const T radius = ly/2.; + std::vector axisPoint(2,T()); + axisPoint[0] = lx/2.; + axisPoint[1] = ly/2.; + std::vector axisDirection(2,T()); + axisDirection[0] = 1; + axisDirection[1] = 0; + PorousPipe2D uSol(axisPoint, axisDirection, radius, r, uCentre[0]); + + + if (iT%vtkIter==0 || hasConverged) { + vtkWriter.write(iT); + + SuperEuklidNorm2D normVel(velocity); + BlockReduction2D2D planeReduction( normVel, 600, BlockDataSyncMode::ReduceOnly ); + // write output of velocity as JPEG + heatmap::write(planeReduction, iT); + + ofstream *ofile = nullptr; + if (singleton::mpi().isMainProcessor()) { + ofile = new ofstream((singleton::directories().getLogOutDir()+"centerVel.dat").c_str()); + } + for (int iY=0; iY<=Ly; ++iY) { + T point[2]= {T(),T()}; + point[0] = lx/2.; + point[1] = (T)iY*converter.getPhysLength(1); + T analytical[2] = {T(),T()}; + uSol(analytical,point); + SuperLatticePhysVelocity2D velocity(sLattice, converter); + AnalyticalFfromSuperF2D intpolateVelocity(velocity, true); + T numerical[2] = {T(),T()}; + intpolateVelocity(numerical,point); + if (singleton::mpi().isMainProcessor()) { + *ofile << iY*dx << " " << analytical[0] + << " " << numerical[0] << "\n"; + if ( iT == .8*converter.getLatticeTime( maxPhysT ) ) { +// if ( iT == converter.numTimeSteps( maxPhysT )-1 ) { + gplot_profile.setData( point[1], {numerical[0], analytical[0]}, {"Numerical profile", "Analytical profile"}, "bottom right" ); + gplot_profile.writePNG(); + } + } + } + delete ofile; + } + + /// Writes output on the console + if (iT%statIter==0 || hasConverged) { + /// Timer console output + timer.update(iT); + timer.printStep(); + + /// Lattice statistics console output + sLattice.getStatistics().print(iT,converter.getPhysTime(iT)); + + /// Error norms + error(superGeometry, sLattice, converter, bulkDynamics, uSol); + + AnalyticalFfromSuperF2D intpolatePressure( pressure, true ); + AnalyticalFfromSuperF2D intpolateVelocity( velocity, true ); + T centre[2] = {converter.getCharPhysLength()/2, converter.getCharPhysLength()/2}; + T uCentre[2]; + intpolateVelocity(uCentre, centre); + + T uMaxMeas = sLattice.getStatistics().getMaxU() / converter.getCharLatticeVelocity(); + T uMaxTheo = G*K/nu*(1.-1./cosh(converter.getCharPhysLength()/2 * sqrt(epsilon/K))); + clout << "uMaxTheo=" << uMaxTheo + << "; uMaxMeas=" << uMaxMeas + << "; uCentre=" << uCentre[0] + << std::endl; + + gplot_uCentre.setData( converter.getPhysTime( iT ), uCentre[0], "Centre velocity", "bottom right" ); + gplot_uCentre.writePNG( iT, maxPhysT ); + } +} + +int main(int argc, char* argv[]) +{ + + /// === 1st Step: Initialization === + olbInit(&argc, &argv); + singleton::directories().setOutputDir("./tmp/"); + OstreamManager clout(std::cout,"main"); + // display messages from every single mpi process + //clout.setMultiOutput(true); + + // Parameters for the simulation setup + int nx; // length of the channel + int ny; // height of the channel + int N; // resolution of the model + T tau; // Relaxation time + T Re; // Reynolds number + T Da; // Darcy number + + T epsilon; // Porosity (non-dimensional) + T K; // Permeability (SI units) + + T maxPhysT; // max. simulation time in s, SI unit + int numOfIterations; // number of iterations reported in paraview-Gnuplot. + T residuum; + + string fName("input.xml"); + XMLreader config(fName); + + config["setup"]["nx"].read(nx); + config["setup"]["ny"].read(ny); + config["setup"]["tau"].read(tau); + config["setup"]["N"].read(N); + config["setup"]["Da"].read(Da); + config["setup"]["Re"].read(Re); + config["porous"]["epsilon"].read(epsilon); + config["porous"]["K"].read(K); + config["time"]["maxPhysT"].read(maxPhysT); + config["time"]["numOfIterations"].read(numOfIterations); + config["convergence"]["residuum"].read(residuum); + + T charL = sqrt(K/Da); + T lx = nx*charL; + T ly = ny*charL; + + //T latticeU = Re*(tau-(T).5)/((T)3*N); + T charU = (T)1.; + T bodyForceValue = charU*charU*charL / ( Re*K*((T)1. - (T)1./cosh(charL/(T)2 * sqrt(epsilon/K))) ); + T nu = bodyForceValue*K/charU*((T)1. - (T)1./cosh(charL/(T)2 * sqrt(epsilon/K))); + + UnitConverterFromResolutionAndRelaxationTime const converter( + int {N}, // resolution: number of voxels per charPhysL + (T) tau, // latticeRelaxationTime: relaxation time, have to be greater than 0.5! + (T) charL, // charPhysLength: reference length of simulation geometry + (T) charU, // charPhysVelocity: maximal/highest expected velocity during simulation in __m / s__ + (T) nu, // physViscosity: physical kinematic viscosity in __m^2 / s__ + (T) 1.0 // physDensity: physical density in __kg / m^3__ + ); + // Prints the converter log as console output + converter.print(); + // Writes the converter log in a file + converter.write("porousPoiseuille2d"); + + /// === 2nd Step: Prepare Geometry === + std::vector extend(2,T()); + extend[0] = lx; + extend[1] = ly; + std::vector origin(2,T()); + IndicatorCuboid2D cuboid(extend, origin); + + /// Instantiation of a cuboidGeometry with weights +#ifdef PARALLEL_MODE_MPI + const int noOfCuboids = singleton::mpi().getSize(); +#else + const int noOfCuboids = 7; +#endif + CuboidGeometry2D cuboidGeometry(cuboid, converter.getPhysDeltaX(), noOfCuboids); + + /// Periodic boundaries in x-direction + cuboidGeometry.setPeriodicity(true, false); + + /// Instantiation of a loadBalancer + HeuristicLoadBalancer loadBalancer(cuboidGeometry); + + /// Instantiation of a superGeometry + SuperGeometry2D superGeometry(cuboidGeometry, loadBalancer, 2); + + prepareGeometry(converter, lx, ly, superGeometry); + + /// === 3rd Step: Prepare Lattice === + SuperLattice2D sLattice(superGeometry); + + DYNAMICS bulkDynamics ( + converter.getLatticeRelaxationFrequency(), + instances::getBulkMomenta() + ); + + SuperGuoZhaoInstantiator2D > sGuoZhaoInstantiator(sLattice); + + // choose between local and non-local boundary condition + sOnLatticeBoundaryCondition2D sBoundaryCondition(sLattice); + createInterpBoundaryCondition2D > (sBoundaryCondition); + + prepareLattice(converter, lx, ly, epsilon, K, bodyForceValue, sLattice, bulkDynamics, sBoundaryCondition, sGuoZhaoInstantiator, superGeometry); + + SuperExternal2D externalForce(superGeometry, sLattice, 2); + SuperExternal2D externalEpsilon(superGeometry, sLattice, 2); + SuperExternal2D externalK(superGeometry, sLattice, 2); + SuperExternal2D externalNu(superGeometry, sLattice, 2); + SuperExternal2D externalBodyForce(superGeometry, sLattice, 2); + + /// === 4th Step: Main Loop with Timer === + clout << "starting simulation..." << endl; + Timer timer(converter.getLatticeTime(maxPhysT), superGeometry.getStatistics().getNvoxel() ); + util::ValueTracer converge( converter.getLatticeTime(maxPhysT/numOfIterations), residuum ); + timer.start(); + + for (int iT = 0; iT < converter.getLatticeTime(maxPhysT); ++iT) { + if ( converge.hasConverged() ) { + clout << "Simulation converged." << endl; + getResults(sLattice, bulkDynamics, converter, lx, ly, bodyForceValue, K, converter.getPhysViscosity(), epsilon, maxPhysT, iT, numOfIterations, superGeometry, timer, converge.hasConverged() ); + break; + } + + /// === 5th Step: Definition of Initial and Boundary Conditions === + // in this application no boundary conditions have to be adjusted + + /// === 6th Step: Collide and Stream Execution === + sLattice.collideAndStream(); + + externalForce.communicate(); + externalEpsilon.communicate(); + externalK.communicate(); + externalNu.communicate(); + externalBodyForce.communicate(); + + /// === 7th Step: Computation and Output of the Results === + getResults(sLattice, bulkDynamics, converter, lx, ly, bodyForceValue, K, converter.getPhysViscosity(), epsilon, maxPhysT, iT, numOfIterations, superGeometry, timer, converge.hasConverged() ); + converge.takeValue( sLattice.getStatistics().getAverageEnergy(), true ); + } + + timer.stop(); + timer.printSummary(); +} + diff --git a/examples/porousMedia/porousPoiseuille3d/Makefile b/examples/porousMedia/porousPoiseuille3d/Makefile new file mode 100644 index 0000000..a953954 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille3d/Makefile @@ -0,0 +1,105 @@ +# This file is part of the OpenLB library +# +# Copyright (C) 2007 Mathias Krause +# E-mail contact: info@openlb.net +# The most recent release of OpenLB can be downloaded at +# +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation; either version 2 +# of the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public +# License along with this program; if not, write to the Free +# Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +# Boston, MA 02110-1301, USA. + +########################################################################### +## definitions + +include definitions.mk + +include $(ROOT)/global.mk + +OBJECTS := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.o)) +DEPS := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.d)) + +########################################################################### +## all + +all : depend compile link + + +########################################################################### +## dependencies + +depend : $(DEPS) + +$(PWD)/%.d : %.cpp + @echo Create dependencies for $< + @$(SHELL) -ec '$(CXX) -M $(CXXFLAGS) $(IDIR) $< \ + | sed -e "s!$*\.o!$(PWD)\/$*\.o!1" > .tmpfile; \ + cp -f .tmpfile $@;' + +########################################################################### +## compile + +compile : $(OBJECTS) + +$(PWD)/%.o: %.cpp + @echo Compile $< + $(CXX) $(CXXFLAGS) $(IDIR) -c $< -o $@ + +########################################################################### +## clean + +clean : cleanrub cleanobj cleandep + +cleanrub: + @echo Clean rubbish files + @rm -f *~ core .tmpfile tmp/*.* $(OUTPUT) + @rm -f tmp/vtkData/*.* tmp/vtkData/data/*.* tmp/imageData/*.* tmp/gnuplotData/*.* tmp/gnuplotData/data/*.* + +cleanobj: + @echo Clean object files + @rm -f $(OBJECTS) + +cleandep: + @echo Clean dependencies files + @rm -f $(DEPS) + +cleanbuild: + @cd $(ROOT); \ + $(MAKE) cleanlib; + +########################################################################### +## update lib + +$(ROOT)/$(LIBDIR)/lib$(LIB).a : + @cd $(ROOT); \ + $(MAKE) all + +########################################################################### +## link + +link: $(OUTPUT) + +$(OUTPUT): $(OBJECTS) $(ROOT)/$(LIBDIR)/lib$(LIB).a + @echo Link $@ + $(CXX) $(foreach file, $(SRC), $(file:.cpp=.o)) $(LDFLAGS) -L$(ROOT)/$(LIBDIR) -l$(LIB) -lz -o $@ + +########################################################################### +## include dependencies + +ifneq "$(strip $(wildcard *.d))" "" + include $(foreach file,$(DEPS),$(file)) +endif + +########################################################################### +########################################################################### diff --git a/examples/porousMedia/porousPoiseuille3d/definitions.mk b/examples/porousMedia/porousPoiseuille3d/definitions.mk new file mode 100644 index 0000000..6dcc037 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille3d/definitions.mk @@ -0,0 +1,30 @@ +# This file is part of the OpenLB library +# +# Copyright (C) 2007 Mathias Krause +# E-mail contact: info@openlb.net +# The most recent release of OpenLB can be downloaded at +# +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation; either version 2 +# of the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public +# License along with this program; if not, write to the Free +# Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +# Boston, MA 02110-1301, USA. + + +########################################################################### +########################################################################### +## DEFINITIONS TO BE CHANGED + +ROOT := ../../.. +SRC := porousPoiseuille3d.cpp +OUTPUT := porousPoiseuille3d diff --git a/examples/porousMedia/porousPoiseuille3d/module.mk b/examples/porousMedia/porousPoiseuille3d/module.mk new file mode 100644 index 0000000..1190482 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille3d/module.mk @@ -0,0 +1,29 @@ +# This file is part of the OpenLB library +# +# Copyright (C) 2017 Markus Mohrhard +# E-mail contact: info@openlb.net +# The most recent release of OpenLB can be downloaded at +# +# +# This program is free software; you can redistribute it and/or +# modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation; either version 2 +# of the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public +# License along with this program; if not, write to the Free +# Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +# Boston, MA 02110-1301, USA. + +current_dir := $(dir $(word $(words $(MAKEFILE_LIST)),$(MAKEFILE_LIST))) + +include global.mk +include rules.mk +include $(addsuffix definitions.mk, $(current_dir)) + +$(eval $(call sample,$(current_dir)$(OUTPUT),$(addprefix $(current_dir), $(SRC)))) diff --git a/examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp b/examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp new file mode 100644 index 0000000..01a7a62 --- /dev/null +++ b/examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp @@ -0,0 +1,484 @@ +/* Lattice Boltzmann sample, written in C++, using the OpenLB + * library + * + * Copyright (C) 2019 Fabian Klemens, Marc Haußmann + * Mathias J. Krause, Vojtech Cvrcek, Peter Weisbrod + * E-mail contact: info@openlb.net + * The most recent release of OpenLB can be downloaded at + * + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program; if not, write to the Free + * Software Foundation, Inc., 51 Franklin Street, Fifth Floor, + * Boston, MA 02110-1301, USA. + */ + +/* porousPoiseuille3d.cpp: + * This example examines a 3D Poseuille flow with porous media. + * Two porous media LB methods can be used here: + * Spaid and Phelan (doi:10.1063/1.869392), or + * Guo and Zhao (doi:10.1103/PhysRevE.66.036304) + */ + + +#include "olb3D.h" +#include "olb3D.hh" + +#include +#include +#include +#include +#include + +using namespace olb; + +typedef double T; + +#define SPAID_PHELAN +//#define GUO_ZHAO + +T epsilon = 1.; +T K = 1e-3; + +#ifdef SPAID_PHELAN +#define DESCRIPTOR descriptors::PorousD3Q19Descriptor +#elif defined GUO_ZHAO +#define DESCRIPTOR descriptors::GuoZhaoD3Q19Descriptor +#endif + + +// Parameters for the simulation setup +const T length = 2.; // length of the pie +const T diameter = 1.; // diameter of the pipe +int N = 21; // resolution of the model +const T physU = 1.; // physical velocity +const T Re = 1.; // Reynolds number +const T physRho = 1.; // physical density +const T tau = 0.8; // lattice relaxation time +const T maxPhysT = 20.; // max. simulation time in s, SI unit +const T residuum = 1e-5; // residuum for the convergence check +const T tuner = 0.97; // for partialSlip only: 0->bounceBack, 1->freeSlip + +// Scaled Parameters +const T radius = diameter/2.; // radius of the pipe +const T physInterval = 0.0125*maxPhysT; // interval for the convergence check in s + + +// Stores geometry information in form of material numbers +void prepareGeometry( UnitConverter const& converter, + SuperGeometry3D& superGeometry ) +{ + + OstreamManager clout(std::cout, "prepareGeometry"); + + clout << "Prepare Geometry ..." << std::endl; + + Vector center0(-converter.getPhysDeltaX() * 0.2, radius, radius); + Vector center1(length, radius, radius); + IndicatorCylinder3D pipe(center0, center1, radius); + + superGeometry.rename(0, 2); + + superGeometry.rename(2, 1, pipe); + + Vector origin(0, radius, radius); + Vector extend = origin; + + // Set material number for inflow + origin[0] = -converter.getPhysDeltaX() * 2; + extend[0] = converter.getPhysDeltaX() * 2; + IndicatorCylinder3D inflow(origin, extend, radius); + superGeometry.rename(2, 3, 1, inflow); + + // Set material number for outflow + origin[0] = length - 2 * converter.getPhysDeltaX(); + extend[0] = length + 2 * converter.getPhysDeltaX(); + IndicatorCylinder3D outflow(extend, origin, radius); + superGeometry.rename(2, 4, 1, outflow); + + // Removes all not needed boundary voxels outside the surface + superGeometry.clean(); + // Removes all not needed boundary voxels inside the surface + superGeometry.innerClean(); + superGeometry.checkForErrors(); + + superGeometry.print(); + + clout << "Prepare Geometry ... OK" << std::endl; +} + +// Set up the geometry of the simulation +void prepareLattice(SuperLattice3D& sLattice, + UnitConverterconst& converter, + Dynamics& bulkDynamics, + sOnLatticeBoundaryCondition3D& onBc, + sOffLatticeBoundaryCondition3D& offBc, + SuperGeometry3D& superGeometry) +{ + + OstreamManager clout( std::cout,"prepareLattice" ); + clout << "Prepare Lattice ..." << std::endl; + + const T omega = converter.getLatticeRelaxationFrequency(); + + // Material=0 -->do nothing + sLattice.defineDynamics( superGeometry, 0, &instances::getNoDynamics() ); + + // Material=1 -->bulk dynamics + sLattice.defineDynamics( superGeometry, 1, &bulkDynamics ); + + Vector center0(0, radius, radius); + Vector center1(length, radius, radius); + + std::vector origin = { length, radius, radius}; + std::vector axis = { 1, 0, 0 }; + + CirclePoiseuille3D poiseuilleU(origin, axis, converter.getCharLatticeVelocity(), radius); + + AnalyticalConst3D zero(0.); + AnalyticalConst3D one(1.); + + T nu = (tau-0.5)/3.; + T h = converter.getPhysDeltaX(); +#ifdef SPAID_PHELAN + T d = 1. - (h*h*nu*tau/K); + clout << "Lattice Porosity: " << d << std::endl; + clout << "Kmin: " << h*h*nu*tau << std::endl; + if (K < h*h*nu*tau) { + clout << "WARNING: Chosen K is too small!" << std::endl; + exit(1); + } +#endif + +#ifdef SPAID_PHELAN + AnalyticalConst3D porosity(d); + sLattice.defineField(superGeometry, 1, porosity); +#elif defined GUO_ZHAO + AnalyticalConst3D Nu(nu); + AnalyticalConst3D k(K/(h*h)); + AnalyticalConst3D eps(epsilon); + + sLattice.defineField(superGeometry, 1, eps); + sLattice.defineField(superGeometry, 1, 1, Nu); + sLattice.defineField(superGeometry, 1, k); +#endif + + sLattice.defineDynamics(superGeometry, 2, &instances::getNoDynamics() ); + + center0[0] -= 0.5*converter.getPhysDeltaX(); + center1[0] += 0.5*converter.getPhysDeltaX(); + IndicatorCylinder3D pipe(center0, center1, radius); + offBc.addZeroVelocityBoundary(superGeometry, 2, pipe); + + sLattice.defineDynamics( superGeometry, 2, &bulkDynamics ); + onBc.addVelocityBoundary( superGeometry, 2, omega ); + + sLattice.defineDynamics(superGeometry, 3, &instances::getNoDynamics() ); + offBc.addVelocityBoundary(superGeometry, 3, pipe); + offBc.defineU(superGeometry,3,poiseuilleU); + + // Material=4 -->bulk dynamics + sLattice.defineDynamics( superGeometry, 4, &bulkDynamics ); + onBc.addPressureBoundary( superGeometry, 4, omega ); + + // Initial conditions + T p0 = 4. * converter.getPhysViscosity() * converter.getCharPhysVelocity() * length / (radius * radius); + + p0 = converter.getLatticePressure(p0); + AnalyticalLinear3D rho(-p0 / length * descriptors::invCs2(), 0, 0, p0 * descriptors::invCs2() + 1); + + std::vector velocity(3, T()); + AnalyticalConst3D uF(velocity); + + // Initialize all values of distribution functions to their local equilibrium + sLattice.defineRhoU(superGeometry, 0, rho, uF); + sLattice.iniEquilibrium(superGeometry, 0, rho, uF); + sLattice.defineRhoU(superGeometry, 1, rho, poiseuilleU); + sLattice.iniEquilibrium(superGeometry, 1, rho, poiseuilleU); + sLattice.defineRhoU(superGeometry, 2, rho, poiseuilleU); + sLattice.iniEquilibrium(superGeometry, 2, rho, poiseuilleU); + sLattice.defineRhoU(superGeometry, 3, rho, poiseuilleU); + sLattice.iniEquilibrium(superGeometry, 3, rho, poiseuilleU); + sLattice.defineRhoU(superGeometry, 4, rho, poiseuilleU); + sLattice.iniEquilibrium(superGeometry, 4, rho, poiseuilleU); + + // Make the lattice ready for simulation + sLattice.initialize(); + + clout << "Prepare Lattice ... OK" << std::endl; +} + +/// Compute error norms +void error( SuperGeometry3D& superGeometry, + SuperLattice3D& sLattice, + UnitConverter const& converter, + AnalyticalF3D& porVel) { + + OstreamManager clout( std::cout,"error" ); + + + int tmp[]= { }; + T result[2]= { }; + auto indicatorF = superGeometry.getMaterialIndicator(1); + SuperLatticePhysVelocity3D u( sLattice, converter ); + + SuperAbsoluteErrorL1Norm3D absVelocityErrorNormL1(u, porVel, indicatorF); + absVelocityErrorNormL1(result, tmp); + clout << "velocity-L1-error(abs)=" << result[0]; + SuperRelativeErrorL1Norm3D relVelocityErrorNormL1(u, porVel, indicatorF); + relVelocityErrorNormL1(result, tmp); + clout << "; velocity-L1-error(rel)=" << result[0] << std::endl; + + SuperAbsoluteErrorL2Norm3D absVelocityErrorNormL2(u, porVel, indicatorF); + absVelocityErrorNormL2(result, tmp); + clout << "velocity-L2-error(abs)=" << result[0]; + SuperRelativeErrorL2Norm3D relVelocityErrorNormL2(u, porVel, indicatorF); + relVelocityErrorNormL2(result, tmp); + clout << "; velocity-L2-error(rel)=" << result[0] << std::endl; + + SuperAbsoluteErrorLinfNorm3D absVelocityErrorNormLinf(u, porVel, indicatorF); + absVelocityErrorNormLinf(result, tmp); + clout << "velocity-Linf-error(abs)=" << result[0]; + SuperRelativeErrorLinfNorm3D relVelocityErrorNormLinf(u, porVel, indicatorF); + relVelocityErrorNormLinf(result, tmp); + clout << "; velocity-Linf-error(rel)=" << result[0] << std::endl; +} + + +// Output to console and files +void getResults( SuperLattice3D& sLattice, Dynamics& bulkDynamics, + UnitConverter const& converter, int iT, + SuperGeometry3D& superGeometry, Timer& timer, bool hasConverged ) +{ + + OstreamManager clout( std::cout,"getResults" ); + + SuperVTMwriter3D vtmWriter( "porousPoiseuille3d" ); + SuperLatticePhysVelocity3D velocity( sLattice, converter ); + SuperLatticePhysPressure3D pressure( sLattice, converter ); + vtmWriter.addFunctor( velocity ); + vtmWriter.addFunctor( pressure ); + + const int vtmIter = converter.getLatticeTime( maxPhysT/20. ); + const int statIter = converter.getLatticeTime( maxPhysT/20. ); + + if ( iT==0 ) { + // Writes the geometry, cuboid no. and rank no. as vti file for visualization + SuperLatticeGeometry3D geometry( sLattice, superGeometry ); + SuperLatticeCuboid3D cuboid( sLattice ); + SuperLatticeRank3D rank( sLattice ); + + vtmWriter.write( geometry ); + vtmWriter.write( cuboid ); + vtmWriter.write( rank ); + + vtmWriter.createMasterFile(); + } + + // Writes the vtm files and profile text file + if ( iT%vtmIter==0 || hasConverged ) { + vtmWriter.write( iT ); + } + + + // Writes output on the console + if ( iT%statIter==0 || hasConverged ) { + // Timer console output + timer.update( iT ); + timer.printStep(); + + // Lattice statistics console output + sLattice.getStatistics().print( iT,converter.getPhysTime( iT ) ); + + // Error norms + AnalyticalFfromSuperF3D intpolatePressure( pressure, true ); + + T point1[3] = {0, radius, radius}; + T point2[3] = {0, radius, radius}; + + point1[0] = length*0.5 - length*0.01; + point2[0] = length*0.5 + length*0.01; + + T p1, p2; + intpolatePressure( &p1,point1 ); + intpolatePressure( &p2,point2 ); + + clout << "pressure1=" << p1; + clout << "; pressure2=" << p2; + + T pressureDrop = p1-p2; + clout << "; pressureDrop=" << pressureDrop; + + AnalyticalFfromSuperF3D intpolateVelocity( velocity, true ); + T midVel[3]; + T mid[3] = {length*0.5, radius, radius}; + intpolateVelocity(midVel, mid); + T mu = converter.getPhysViscosity()*converter.getPhysDensity(); + T l = point2[0] - point1[0]; + T vel = midVel[0]; + T pressureGradient = pressureDrop/l; + + AnalyticalPorousVelocity3D porVel(superGeometry, 3, K, mu, pressureGradient, radius, epsilon); + + /// Darcy law + T expectedPressureDrop = vel*mu*l/K; + T darcyFlux = K*pressureGradient/mu; +#ifdef GUO_ZHAO + expectedPressureDrop *= epsilon; + darcyFlux /= epsilon; +#endif + + clout << "; expected(darcy)=" << expectedPressureDrop << std::endl; + clout << "peakVelocity=" << midVel[0]; + clout << "; expected(darcy)=" << darcyFlux << std::endl; + clout << "peakVelocity(analytical)=" << porVel.getPeakVelocity(); + clout << "; peakVelocity-error(rel)=" << abs(porVel.getPeakVelocity()-vel)/porVel.getPeakVelocity() << std::endl; + + error(superGeometry, sLattice, converter, porVel); + + // Gnuplot + Gnuplot gplot( "velocityProfile" ); + T uAnalytical[3] = {}; + T uNumerical[3] = {}; + for (int i=0; i<101; i++) { + T yInput = diameter*i/100.; + T input[3] = {length*0.5, yInput, radius}; + porVel(uAnalytical, input); + intpolateVelocity(uNumerical, input); + gplot.setData( yInput, {uAnalytical[0], uNumerical[0]}, {"analytical","numerical"} ); + } + + // Create PNG file + gplot.writePNG(); + } +} + +int main( int argc, char* argv[] ) +{ + + // === 1st Step: Initialization === + olbInit( &argc, &argv ); + singleton::directories().setOutputDir( "./tmp/" ); + OstreamManager clout( std::cout,"main" ); + + if (argc > 1) { + if (argv[1][0]=='-'&&argv[1][1]=='h') { + OstreamManager clout( std::cout,"help" ); + clout<<"Usage: program [Resolution] [Permeability]" < 1) { + N = atoi(argv[1]); + if (N < 1) { + std::cerr << "Fluid domain is too small" << std::endl; + return 1; + } + } + + if (argc > 2) { + K = atof(argv[2]); + if (K < 0) { + std::cerr << "Permeabilty must be greater than 0" << std::endl; + return 2; + } + } + + UnitConverterFromResolutionAndRelaxationTime const converter( + int {N}, // resolution: number of voxels per charPhysL + (T) tau, // latticeRelaxationTime: relaxation time, have to be greater than 0.5! + (T) diameter, // charPhysLength: reference length of simulation geometry + (T) physU, // charPhysVelocity: maximal/highest expected velocity during simulation in __m / s__ + (T) diameter*physU/Re, // physViscosity: physical kinematic viscosity in __m^2 / s__ + (T) physRho // physDensity: physical density in __kg / m^3__ + ); + // Prints the converter log as console output + converter.print(); + // Writes the converter log in a file + converter.write("porousPoiseuille3d"); + + + // === 2nd Step: Prepare Geometry === + + Vector center0(0, radius, radius); + Vector center1(length, radius, radius); + IndicatorCylinder3D pipe(center0, center1, radius); + IndicatorLayer3D extendedDomain(pipe, converter.getPhysDeltaX()); + + // Instantiation of a cuboidGeometry with weights +#ifdef PARALLEL_MODE_MPI + const int noOfCuboids = 2*singleton::mpi().getSize(); +#else // ifdef PARALLEL_MODE_MPI + const int noOfCuboids = 6; +#endif // ifdef PARALLEL_MODE_MPI + CuboidGeometry3D cuboidGeometry(extendedDomain, converter.getPhysDeltaX(), noOfCuboids); + + // Instantiation of a loadBalancer + HeuristicLoadBalancer loadBalancer(cuboidGeometry); + + // Instantiation of a superGeometry + SuperGeometry3D superGeometry(cuboidGeometry, loadBalancer, 2); + + prepareGeometry(converter, superGeometry); + + // === 3rd Step: Prepare Lattice === + SuperLattice3D sLattice( superGeometry ); + + std::unique_ptr> bulkDynamics; + +#ifdef SPAID_PHELAN + bulkDynamics.reset(new PorousBGKdynamics( converter.getLatticeRelaxationFrequency(), instances::getBulkMomenta() )); +#elif defined GUO_ZHAO + bulkDynamics.reset(new GuoZhaoBGKdynamics( converter.getLatticeRelaxationFrequency(), instances::getBulkMomenta() )); +#endif + + + // choose between local and non-local boundary condition + sOnLatticeBoundaryCondition3D sOnBoundaryCondition( sLattice ); + sOffLatticeBoundaryCondition3D sOffBoundaryCondition(sLattice); + createBouzidiBoundaryCondition3D(sOffBoundaryCondition); + + createInterpBoundaryCondition3D ( sOnBoundaryCondition ); + + prepareLattice(sLattice, converter, *bulkDynamics, sOnBoundaryCondition, sOffBoundaryCondition, superGeometry); + + // === 4th Step: Main Loop with Timer === + clout << "starting simulation..." << endl; + Timer timer( converter.getLatticeTime( maxPhysT ), superGeometry.getStatistics().getNvoxel() ); + util::ValueTracer converge( converter.getLatticeTime( physInterval ), residuum ); + timer.start(); + + for ( int iT = 0; iT < converter.getLatticeTime( maxPhysT ); ++iT ) { + if ( converge.hasConverged() ) { + clout << "Simulation converged." << endl; + getResults( sLattice, *bulkDynamics, converter, iT, superGeometry, timer, converge.hasConverged() ); + + break; + } + + // === 5th Step: Definition of Initial and Boundary Conditions === + // in this application no boundary conditions have to be adjusted + + // === 6th Step: Collide and Stream Execution === + sLattice.collideAndStream(); + + // === 7th Step: Computation and Output of the Results === + getResults( sLattice, *bulkDynamics, converter, iT, superGeometry, timer, converge.hasConverged() ); + converge.takeValue( sLattice.getStatistics().getAverageEnergy(), true ); + } + + timer.stop(); + timer.printSummary(); +} -- cgit v1.2.3