Initialize at openlb-1-3

9 files changed, 1311 insertions, 0 deletions

diff --git a/examples/porousMedia/porousPoiseuille2d/Makefile b/examples/porousMedia/porousPoiseuille2d/Makefile
new file mode 100644
index 0000000..a953954
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille2d/Makefile
@@ -0,0 +1,105 @@
+#  This file is part of the OpenLB library
+#
+#  Copyright (C) 2007 Mathias Krause
+#  E-mail contact: info@openlb.net
+#  The most recent release of OpenLB can be downloaded at
+#  <http://www.openlb.net/>
+#
+#  This program is free software; you can redistribute it and/or
+#  modify it under the terms of the GNU General Public License
+#  as published by the Free Software Foundation; either version 2
+#  of the License, or (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public
+#  License along with this program; if not, write to the Free
+#  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+#  Boston, MA  02110-1301, USA.
+
+###########################################################################
+## definitions
+
+include definitions.mk
+
+include $(ROOT)/global.mk
+
+OBJECTS    := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.o))
+DEPS       := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.d))
+
+###########################################################################
+## all
+
+all : depend compile link
+
+
+###########################################################################
+## dependencies
+
+depend : $(DEPS)
+
+$(PWD)/%.d : %.cpp
+	@echo Create dependencies for $<
+	@$(SHELL) -ec '$(CXX) -M $(CXXFLAGS) $(IDIR) $< \
+                       | sed -e "s!$*\.o!$(PWD)\/$*\.o!1" > .tmpfile; \
+                       cp -f .tmpfile $@;'
+
+###########################################################################
+## compile
+
+compile : $(OBJECTS)
+
+$(PWD)/%.o: %.cpp
+	@echo Compile $<
+	$(CXX) $(CXXFLAGS) $(IDIR) -c $< -o $@
+
+###########################################################################
+## clean
+
+clean : cleanrub cleanobj cleandep
+
+cleanrub:
+	@echo Clean rubbish files
+	@rm -f *~ core .tmpfile tmp/*.* $(OUTPUT)
+	@rm -f tmp/vtkData/*.* tmp/vtkData/data/*.* tmp/imageData/*.* tmp/gnuplotData/*.* tmp/gnuplotData/data/*.*
+
+cleanobj:
+	@echo Clean object files
+	@rm -f $(OBJECTS)
+
+cleandep:
+	@echo Clean dependencies files
+	@rm -f $(DEPS)
+
+cleanbuild:
+	@cd $(ROOT); \
+	 $(MAKE) cleanlib;
+
+###########################################################################
+## update lib
+
+$(ROOT)/$(LIBDIR)/lib$(LIB).a :
+	@cd $(ROOT); \
+	$(MAKE) all
+
+###########################################################################
+## link
+
+link: $(OUTPUT)
+
+$(OUTPUT): $(OBJECTS) $(ROOT)/$(LIBDIR)/lib$(LIB).a
+	@echo Link $@
+	$(CXX) $(foreach file, $(SRC), $(file:.cpp=.o)) $(LDFLAGS) -L$(ROOT)/$(LIBDIR) -l$(LIB) -lz -o $@
+
+###########################################################################
+## include dependencies
+
+ifneq "$(strip $(wildcard *.d))" ""
+   include $(foreach file,$(DEPS),$(file))
+endif
+
+###########################################################################
+###########################################################################
diff --git a/examples/porousMedia/porousPoiseuille2d/definitions.mk b/examples/porousMedia/porousPoiseuille2d/definitions.mk
new file mode 100644
index 0000000..55a8413
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille2d/definitions.mk
@@ -0,0 +1,30 @@
+#  This file is part of the OpenLB library
+#
+#  Copyright (C) 2007 Mathias Krause
+#  E-mail contact: info@openlb.net
+#  The most recent release of OpenLB can be downloaded at
+#  <http://www.openlb.net/>
+#
+#  This program is free software; you can redistribute it and/or
+#  modify it under the terms of the GNU General Public License
+#  as published by the Free Software Foundation; either version 2
+#  of the License, or (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public
+#  License along with this program; if not, write to the Free
+#  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+#  Boston, MA  02110-1301, USA.
+
+
+###########################################################################
+###########################################################################
+## DEFINITIONS TO BE CHANGED
+
+ROOT            := ../../..
+SRC             := porousPoiseuille2d.cpp
+OUTPUT          := porousPoiseuille2d
diff --git a/examples/porousMedia/porousPoiseuille2d/input.xml b/examples/porousMedia/porousPoiseuille2d/input.xml
new file mode 100644
index 0000000..d497d40
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille2d/input.xml
@@ -0,0 +1,21 @@
+<Param>
+<setup>
+<nx>1</nx>
+<ny>1</ny>
+<N>200</N>
+<tau>0.8</tau>
+<Re>.1</Re>
+<Da>1e-4</Da>
+</setup>
+<porous>
+<epsilon>0.1</epsilon>
+<K>1e-2</K>
+</porous>
+<time>
+<maxPhysT>0.1</maxPhysT>
+<numOfIterations>30</numOfIterations>
+</time>
+<convergence>
+<residuum>1e-7</residuum>
+</convergence>
+</Param>
diff --git a/examples/porousMedia/porousPoiseuille2d/module.mk b/examples/porousMedia/porousPoiseuille2d/module.mk
new file mode 100644
index 0000000..1190482
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille2d/module.mk
@@ -0,0 +1,29 @@
+#  This file is part of the OpenLB library
+#
+#  Copyright (C) 2017 Markus Mohrhard
+#  E-mail contact: info@openlb.net
+#  The most recent release of OpenLB can be downloaded at
+#  <http://www.openlb.net/>
+#
+#  This program is free software; you can redistribute it and/or
+#  modify it under the terms of the GNU General Public License
+#  as published by the Free Software Foundation; either version 2
+#  of the License, or (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public
+#  License along with this program; if not, write to the Free
+#  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+#  Boston, MA  02110-1301, USA.
+
+current_dir := $(dir $(word $(words $(MAKEFILE_LIST)),$(MAKEFILE_LIST)))
+
+include global.mk
+include rules.mk
+include $(addsuffix definitions.mk, $(current_dir))
+
+$(eval $(call sample,$(current_dir)$(OUTPUT),$(addprefix $(current_dir), $(SRC))))
diff --git a/examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp b/examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp
new file mode 100644
index 0000000..91f3456
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille2d/porousPoiseuille2d.cpp
@@ -0,0 +1,478 @@
+/*  Lattice Boltzmann sample, written in C++, using the OpenLB
+ *  library
+ *
+ *  Copyright (C) 2017 Davide Dapelo, Mathias J. Krause
+ *  E-mail contact: info@openlb.net
+ *  The most recent release of OpenLB can be downloaded at
+ *  <http://www.openlb.net/>
+ *
+ *  This program is free software; you can redistribute it and/or
+ *  modify it under the terms of the GNU General Public License
+ *  as published by the Free Software Foundation; either version 2
+ *  of the License, or (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public
+ *  License along with this program; if not, write to the Free
+ *  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+ *  Boston, MA  02110-1301, USA.
+ */
+
+/* porousPoiseuille2d.cpp:
+ * Poiseuille flow through porous media.
+ * This implementation is the reproduction of the Guo and Zhao (2002)'s
+ * benchmark example A. The theoretical maximum velocity is calculated
+ * as in Equation 21, and the velocity profile as in Equation 23 of
+ * the original reference.
+ */
+
+#include "olb2D.h"
+#include "olb2D.hh"   // use only generic version!
+
+#include <vector>
+#include <cmath>
+#include <iostream>
+#include <iomanip>
+#include <fstream>
+
+using namespace olb;
+using namespace olb::descriptors;
+using namespace olb::graphics;
+using namespace std;
+
+typedef double T;
+#define DESCRIPTOR GuoZhaoD2Q9Descriptor
+#define DYNAMICS GuoZhaoBGKdynamics
+//#define DYNAMICS SmagorinskyGuoZhaoBGKdynamics
+
+/// Functional to calculate velocity profile on pipe with porous media.
+template <typename T>
+class PorousPipe2D : public AnalyticalF2D<T,T> {
+protected:
+  std::vector<T> axisPoint;
+  std::vector<T> axisDirection;
+  T radius, rFactor, u0;
+
+public:
+  PorousPipe2D(std::vector<T> axisPoint_, std::vector<T> axisDirection_, T radius_, T rFactor_, T u0_);
+  bool operator()(T output[], const T x[]) override;
+};
+
+template <typename T>
+PorousPipe2D<T>::PorousPipe2D(std::vector<T> axisPoint_, std::vector<T> axisDirection_, T radius_, T rFactor_, T u0_)
+  : AnalyticalF2D<T,T>(2)
+{
+  this->getName() = "PorousPipe2D";
+  axisPoint.resize(2);
+  axisDirection.resize(2);
+  for (int i = 0; i < 2; ++i) {
+    axisDirection[i] = axisDirection_[i];
+    axisPoint[i] = axisPoint_[i];
+  }
+  radius = radius_;
+  rFactor = rFactor_;
+  u0 = u0_;
+}
+
+template <typename T>
+bool PorousPipe2D<T>::operator()(T output[], const T x[])
+{
+  output[0] = axisDirection[0]*u0*(cosh(rFactor*radius) - cosh(rFactor*x[1] - rFactor*radius))/(cosh(rFactor*radius) - 1);
+  output[1] = axisDirection[1]*u0*(cosh(rFactor*radius) - cosh(rFactor*x[0] - rFactor*radius))/(cosh(rFactor*radius) - 1);
+
+  return true;
+}
+
+/// Stores geometry information in form of material numbers
+void prepareGeometry(UnitConverter<T,DESCRIPTOR> const& converter, T lx, T ly,
+                     SuperGeometry2D<T>& superGeometry)
+{
+
+  OstreamManager clout(std::cout,"prepareGeometry");
+  clout << "Prepare Geometry ..." << std::endl;
+
+  superGeometry.rename(0,2);
+
+  std::vector<T> extend(2,T());
+  extend[0] = lx;
+  extend[1] = ly - 1.8*converter.getPhysLength(1);
+  std::vector<T> origin(2,T());
+  origin[1] = 0.9*converter.getPhysLength(1);
+  IndicatorCuboid2D<T> cuboid2(extend, origin);
+
+  superGeometry.rename(2,1,cuboid2);
+
+  /// Removes all not needed boundary voxels outside the surface
+  superGeometry.clean();
+  /// Removes all not needed boundary voxels inside the surface
+  superGeometry.innerClean();
+  superGeometry.checkForErrors();
+
+  superGeometry.print();
+
+  clout << "Prepare Geometry ... OK" << std::endl;
+}
+
+/// Set up the geometry of the simulation
+void prepareLattice(UnitConverter<T,DESCRIPTOR> const& converter, T lx, T ly,
+                    T epsilonIn, T KIn, T bodyForceIn,
+                    SuperLattice2D<T, DESCRIPTOR>& sLattice,
+                    Dynamics<T, DESCRIPTOR>& bulkDynamics,
+                    sOnLatticeBoundaryCondition2D<T,DESCRIPTOR>& sBoundaryCondition,
+                    SuperGuoZhaoInstantiator2D<T, DESCRIPTOR, DYNAMICS<T, DESCRIPTOR> >& sGuoZhaoInstantiator,
+                    SuperGeometry2D<T>& superGeometry )
+{
+
+  OstreamManager clout(std::cout,"prepareLattice");
+  clout << "Prepare Lattice ..." << std::endl;
+
+  T   omega = converter.getLatticeRelaxationFrequency();
+
+  /// Material=0 -->do nothing
+  sLattice.defineDynamics(superGeometry, 0, &instances::getNoDynamics<T, DESCRIPTOR>());
+
+  /// Material=1 -->bulk dynamics
+  sLattice.defineDynamics(superGeometry, 1, &bulkDynamics);
+
+  /// Material=2 -->bulk dynamics
+  sLattice.defineDynamics(superGeometry, 2, &bulkDynamics);
+
+  /// Setting of the boundary conditions
+  sBoundaryCondition.addVelocityBoundary(superGeometry, 2, omega);
+
+  /// Initial conditions
+  std::vector<T> epsilonValue(1, epsilonIn);
+  AnalyticalConst2D<T,T> epsilon(epsilonValue);
+
+  std::vector<T> KValue(1, KIn);
+  AnalyticalConst2D<T,T> K(KValue);
+
+  std::vector<T> bodyForceValue (2, (T)0);
+  bodyForceValue[0] = bodyForceIn;
+  AnalyticalConst2D<T,T> bodyForce(bodyForceValue);
+
+  // Initialize porosity
+  sGuoZhaoInstantiator.defineEpsilon(superGeometry, 1, epsilon);
+  sGuoZhaoInstantiator.defineEpsilon(superGeometry, 2, epsilon);
+
+  sGuoZhaoInstantiator.defineK(converter, superGeometry, 1, K);
+  sGuoZhaoInstantiator.defineK(converter, superGeometry, 2, K);
+
+  sGuoZhaoInstantiator.defineNu(converter, superGeometry, 1);
+  sGuoZhaoInstantiator.defineNu(converter, superGeometry, 2);
+
+  sGuoZhaoInstantiator.defineBodyForce(converter, superGeometry, 1, bodyForce);
+  sGuoZhaoInstantiator.defineBodyForce(converter, superGeometry, 2, bodyForce);
+
+  /// Make the lattice ready for simulation
+  clout << "Ready to initialize the lattice..." << std::endl;
+  sLattice.initialize();
+
+  clout << "Prepare Lattice ... OK" << std::endl;
+}
+
+/// Compute error norms
+void error( SuperGeometry2D<T>& superGeometry,
+            SuperLattice2D<T, DESCRIPTOR>& sLattice,
+            UnitConverter<T,DESCRIPTOR> const& converter,
+            Dynamics<T, DESCRIPTOR>& bulkDynamics,
+            AnalyticalF2D<T,T>& uSol) {
+
+  OstreamManager clout( std::cout,"error" );
+
+  int input[1] = { };
+  T result[1]  = { };
+
+  SuperLatticePhysVelocity2D<T,DESCRIPTOR> u( sLattice,converter );
+  auto indicatorF = superGeometry.getMaterialIndicator(1);
+
+  // velocity error
+  SuperAbsoluteErrorL1Norm2D<T> absVelocityErrorNormL1(u, uSol, indicatorF);
+  absVelocityErrorNormL1(result, input);
+  clout << "velocity-L1-error(abs)=" << result[0];
+  SuperRelativeErrorL1Norm2D<T> relVelocityErrorNormL1(u, uSol, indicatorF);
+  relVelocityErrorNormL1(result, input);
+  clout << "; velocity-L1-error(rel)=" << result[0] << std::endl;
+
+  SuperAbsoluteErrorL2Norm2D<T> absVelocityErrorNormL2(u, uSol, indicatorF);
+  absVelocityErrorNormL2(result, input);
+  clout << "velocity-L2-error(abs)=" << result[0];
+  SuperRelativeErrorL2Norm2D<T> relVelocityErrorNormL2(u, uSol, indicatorF);
+  relVelocityErrorNormL2(result, input);
+  clout << "; velocity-L2-error(rel)=" << result[0] << std::endl;
+
+  SuperAbsoluteErrorLinfNorm2D<T> absVelocityErrorNormLinf(u, uSol, indicatorF);
+  absVelocityErrorNormLinf(result, input);
+  clout << "velocity-Linf-error(abs)=" << result[0] << std::endl;
+}
+
+/// Output to console and files
+void getResults(SuperLattice2D<T,DESCRIPTOR>& sLattice, Dynamics<T, DESCRIPTOR>& bulkDynamics,
+                UnitConverter<T,DESCRIPTOR> const& converter, T lx, T ly, T G, T K, T nu, T epsilon, T maxPhysT, int iT, int numOfIterations,
+                SuperGeometry2D<T>& superGeometry, Timer<T>& timer, bool hasConverged)
+{
+
+  OstreamManager clout(std::cout,"getResults");
+
+  SuperVTMwriter2D<T> vtkWriter("porousPoiseuille2d");
+  SuperLatticePhysVelocity2D<T, DESCRIPTOR> velocity(sLattice, converter);
+  SuperLatticePhysPressure2D<T, DESCRIPTOR> pressure(sLattice, converter);
+//  SuperLatticeEpsilon2D<T, DESCRIPTOR> epsilonVTM(sLattice, converter);
+//  SuperLatticePhysK2D<T, DESCRIPTOR> KVTM(sLattice, converter);
+//  SuperLatticePhysBodyForce2D<T, DESCRIPTOR> bodyForce(sLattice, converter);
+  vtkWriter.addFunctor( velocity );
+  vtkWriter.addFunctor( pressure );
+//  vtkWriter.addFunctor( epsilonVTM );
+//  vtkWriter.addFunctor( KVTM );
+//  vtkWriter.addFunctor( bodyForce );
+
+  const int vtkIter  = converter.getLatticeTime(maxPhysT/numOfIterations);
+  const int statIter = converter.getLatticeTime(maxPhysT/numOfIterations);
+
+  static Gnuplot<T> gplot_uCentre( "uCentre" );
+  static Gnuplot<T> gplot_profile( "profile" );
+
+  if (iT==0) {
+    /// Writes the geometry, cuboid no. and rank no. as vti file for visualization
+    SuperLatticeGeometry2D<T, DESCRIPTOR> geometry(sLattice, superGeometry);
+    SuperLatticeCuboid2D<T, DESCRIPTOR> cuboid(sLattice);
+    SuperLatticeRank2D<T, DESCRIPTOR> rank(sLattice);
+    superGeometry.rename(0,2);
+    vtkWriter.write(geometry);
+    vtkWriter.write(cuboid);
+    vtkWriter.write(rank);
+
+    vtkWriter.createMasterFile();
+  }
+
+  /// Writes the vtk files and profile text file
+ T Ly = converter.getLatticeLength(ly);
+    AnalyticalFfromSuperF2D<T> intpolateVelocity( velocity, true );
+    T centre[2] = {converter.getCharPhysLength()/2, converter.getCharPhysLength()/2};
+    T uCentre[2];
+    intpolateVelocity(uCentre, centre);
+    T r = sqrt(epsilon/K);
+    T dx = converter.getPhysDeltaX();
+    const T radius = ly/2.;
+    std::vector<T> axisPoint(2,T());
+    axisPoint[0] = lx/2.;
+    axisPoint[1] = ly/2.;
+    std::vector<T> axisDirection(2,T());
+    axisDirection[0] = 1;
+    axisDirection[1] = 0;
+    PorousPipe2D<T> uSol(axisPoint, axisDirection, radius, r, uCentre[0]);
+
+
+  if (iT%vtkIter==0 || hasConverged) {
+    vtkWriter.write(iT);
+
+    SuperEuklidNorm2D<T, DESCRIPTOR> normVel(velocity);
+    BlockReduction2D2D<T> planeReduction( normVel, 600, BlockDataSyncMode::ReduceOnly );
+    // write output of velocity as JPEG
+    heatmap::write(planeReduction, iT);
+
+    ofstream *ofile = nullptr;
+    if (singleton::mpi().isMainProcessor()) {
+      ofile = new ofstream((singleton::directories().getLogOutDir()+"centerVel.dat").c_str());
+    }
+    for (int iY=0; iY<=Ly; ++iY) {
+      T point[2]= {T(),T()};
+      point[0] = lx/2.;
+      point[1] = (T)iY*converter.getPhysLength(1);
+      T analytical[2] = {T(),T()};
+      uSol(analytical,point);
+      SuperLatticePhysVelocity2D<T, DESCRIPTOR> velocity(sLattice, converter);
+      AnalyticalFfromSuperF2D<T> intpolateVelocity(velocity, true);
+      T numerical[2] = {T(),T()};
+      intpolateVelocity(numerical,point);
+      if (singleton::mpi().isMainProcessor()) {
+        *ofile << iY*dx << " " << analytical[0]
+               << " " << numerical[0] << "\n";
+        if ( iT == .8*converter.getLatticeTime( maxPhysT ) ) {
+//          if ( iT == converter.numTimeSteps( maxPhysT )-1 ) {
+          gplot_profile.setData( point[1], {numerical[0], analytical[0]}, {"Numerical profile", "Analytical profile"}, "bottom right" );
+          gplot_profile.writePNG();
+        }
+      }
+    }
+    delete ofile;
+  }
+
+  /// Writes output on the console
+  if (iT%statIter==0 || hasConverged) {
+    /// Timer console output
+    timer.update(iT);
+    timer.printStep();
+
+    /// Lattice statistics console output
+    sLattice.getStatistics().print(iT,converter.getPhysTime(iT));
+
+    /// Error norms
+    error(superGeometry, sLattice, converter, bulkDynamics, uSol);
+
+    AnalyticalFfromSuperF2D<T> intpolatePressure( pressure, true );
+    AnalyticalFfromSuperF2D<T> intpolateVelocity( velocity, true );
+    T centre[2] = {converter.getCharPhysLength()/2, converter.getCharPhysLength()/2};
+    T uCentre[2];
+    intpolateVelocity(uCentre, centre);
+
+    T uMaxMeas = sLattice.getStatistics().getMaxU() / converter.getCharLatticeVelocity();
+    T uMaxTheo = G*K/nu*(1.-1./cosh(converter.getCharPhysLength()/2 * sqrt(epsilon/K)));
+    clout << "uMaxTheo=" << uMaxTheo
+          << "; uMaxMeas=" << uMaxMeas
+          << "; uCentre="  << uCentre[0]
+          << std::endl;
+
+    gplot_uCentre.setData( converter.getPhysTime( iT ), uCentre[0], "Centre velocity", "bottom right" );
+    gplot_uCentre.writePNG( iT, maxPhysT );
+  }
+}
+
+int main(int argc, char* argv[])
+{
+
+  /// === 1st Step: Initialization ===
+  olbInit(&argc, &argv);
+  singleton::directories().setOutputDir("./tmp/");
+  OstreamManager clout(std::cout,"main");
+  // display messages from every single mpi process
+  //clout.setMultiOutput(true);
+
+  // Parameters for the simulation setup
+  int nx;      // length of the channel
+  int ny;      // height of the channel
+  int N;       // resolution of the model
+  T tau;       // Relaxation time
+  T Re;        // Reynolds number
+  T Da;        // Darcy number
+
+  T epsilon;        // Porosity (non-dimensional)
+  T K;              // Permeability (SI units)
+
+  T maxPhysT; // max. simulation time in s, SI unit
+  int numOfIterations; // number of iterations reported in paraview-Gnuplot.
+  T residuum;
+
+  string fName("input.xml");
+  XMLreader config(fName);
+
+  config["setup"]["nx"].read(nx);
+  config["setup"]["ny"].read(ny);
+  config["setup"]["tau"].read(tau);
+  config["setup"]["N"].read(N);
+  config["setup"]["Da"].read(Da);
+  config["setup"]["Re"].read(Re);
+  config["porous"]["epsilon"].read(epsilon);
+  config["porous"]["K"].read(K);
+  config["time"]["maxPhysT"].read(maxPhysT);
+  config["time"]["numOfIterations"].read(numOfIterations);
+  config["convergence"]["residuum"].read(residuum);
+
+  T charL = sqrt(K/Da);
+  T lx = nx*charL;
+  T ly = ny*charL;
+
+  //T latticeU = Re*(tau-(T).5)/((T)3*N);
+  T charU = (T)1.;
+  T bodyForceValue = charU*charU*charL / ( Re*K*((T)1. - (T)1./cosh(charL/(T)2 * sqrt(epsilon/K))) );
+  T nu = bodyForceValue*K/charU*((T)1. - (T)1./cosh(charL/(T)2 * sqrt(epsilon/K)));
+
+  UnitConverterFromResolutionAndRelaxationTime<T, DESCRIPTOR> const converter(
+    int {N},     // resolution: number of voxels per charPhysL
+    (T)   tau,   // latticeRelaxationTime: relaxation time, have to be greater than 0.5!
+    (T)   charL, // charPhysLength: reference length of simulation geometry
+    (T)   charU, // charPhysVelocity: maximal/highest expected velocity during simulation in __m / s__
+    (T)   nu,    // physViscosity: physical kinematic viscosity in __m^2 / s__
+    (T)   1.0    // physDensity: physical density in __kg / m^3__
+  );
+  // Prints the converter log as console output
+  converter.print();
+  // Writes the converter log in a file
+  converter.write("porousPoiseuille2d");
+
+  /// === 2nd Step: Prepare Geometry ===
+  std::vector<T> extend(2,T());
+  extend[0] = lx;
+  extend[1] = ly;
+  std::vector<T> origin(2,T());
+  IndicatorCuboid2D<T> cuboid(extend, origin);
+
+  /// Instantiation of a cuboidGeometry with weights
+#ifdef PARALLEL_MODE_MPI
+  const int noOfCuboids = singleton::mpi().getSize();
+#else
+  const int noOfCuboids = 7;
+#endif
+  CuboidGeometry2D<T> cuboidGeometry(cuboid, converter.getPhysDeltaX(), noOfCuboids);
+
+  /// Periodic boundaries in x-direction
+  cuboidGeometry.setPeriodicity(true, false);
+
+  /// Instantiation of a loadBalancer
+  HeuristicLoadBalancer<T> loadBalancer(cuboidGeometry);
+
+  /// Instantiation of a superGeometry
+  SuperGeometry2D<T> superGeometry(cuboidGeometry, loadBalancer, 2);
+
+  prepareGeometry(converter, lx, ly, superGeometry);
+
+  /// === 3rd Step: Prepare Lattice ===
+  SuperLattice2D<T, DESCRIPTOR> sLattice(superGeometry);
+
+  DYNAMICS<T, DESCRIPTOR> bulkDynamics (
+    converter.getLatticeRelaxationFrequency(),
+    instances::getBulkMomenta<T,DESCRIPTOR>()
+  );
+
+  SuperGuoZhaoInstantiator2D<T, DESCRIPTOR, DYNAMICS<T, DESCRIPTOR> > sGuoZhaoInstantiator(sLattice);
+
+  // choose between local and non-local boundary condition
+  sOnLatticeBoundaryCondition2D<T, DESCRIPTOR> sBoundaryCondition(sLattice);
+  createInterpBoundaryCondition2D<T, DESCRIPTOR, DYNAMICS<T, DESCRIPTOR> > (sBoundaryCondition);
+
+  prepareLattice(converter, lx, ly, epsilon, K, bodyForceValue, sLattice, bulkDynamics, sBoundaryCondition, sGuoZhaoInstantiator, superGeometry);
+
+  SuperExternal2D<T, DESCRIPTOR, descriptors::FORCE>      externalForce(superGeometry, sLattice, 2);
+  SuperExternal2D<T, DESCRIPTOR, descriptors::EPSILON>    externalEpsilon(superGeometry, sLattice, 2);
+  SuperExternal2D<T, DESCRIPTOR, descriptors::K>          externalK(superGeometry, sLattice, 2);
+  SuperExternal2D<T, DESCRIPTOR, descriptors::NU>         externalNu(superGeometry, sLattice, 2);
+  SuperExternal2D<T, DESCRIPTOR, descriptors::BODY_FORCE> externalBodyForce(superGeometry, sLattice, 2);
+
+  /// === 4th Step: Main Loop with Timer ===
+  clout << "starting simulation..." << endl;
+  Timer<T> timer(converter.getLatticeTime(maxPhysT), superGeometry.getStatistics().getNvoxel() );
+  util::ValueTracer<T> converge( converter.getLatticeTime(maxPhysT/numOfIterations), residuum );
+  timer.start();
+
+  for (int iT = 0; iT < converter.getLatticeTime(maxPhysT); ++iT) {
+    if ( converge.hasConverged() ) {
+       clout << "Simulation converged." << endl;
+       getResults(sLattice, bulkDynamics, converter, lx, ly, bodyForceValue, K, converter.getPhysViscosity(), epsilon, maxPhysT, iT, numOfIterations, superGeometry, timer, converge.hasConverged() );
+        break;
+     }
+
+    /// === 5th Step: Definition of Initial and Boundary Conditions ===
+    // in this application no boundary conditions have to be adjusted
+
+    /// === 6th Step: Collide and Stream Execution ===
+    sLattice.collideAndStream();
+
+    externalForce.communicate();
+    externalEpsilon.communicate();
+    externalK.communicate();
+    externalNu.communicate();
+    externalBodyForce.communicate();
+
+    /// === 7th Step: Computation and Output of the Results ===
+    getResults(sLattice, bulkDynamics, converter, lx, ly, bodyForceValue, K, converter.getPhysViscosity(), epsilon, maxPhysT, iT, numOfIterations, superGeometry, timer, converge.hasConverged() );
+  converge.takeValue( sLattice.getStatistics().getAverageEnergy(), true );
+  }
+
+  timer.stop();
+  timer.printSummary();
+}
+
diff --git a/examples/porousMedia/porousPoiseuille3d/Makefile b/examples/porousMedia/porousPoiseuille3d/Makefile
new file mode 100644
index 0000000..a953954
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille3d/Makefile
@@ -0,0 +1,105 @@
+#  This file is part of the OpenLB library
+#
+#  Copyright (C) 2007 Mathias Krause
+#  E-mail contact: info@openlb.net
+#  The most recent release of OpenLB can be downloaded at
+#  <http://www.openlb.net/>
+#
+#  This program is free software; you can redistribute it and/or
+#  modify it under the terms of the GNU General Public License
+#  as published by the Free Software Foundation; either version 2
+#  of the License, or (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public
+#  License along with this program; if not, write to the Free
+#  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+#  Boston, MA  02110-1301, USA.
+
+###########################################################################
+## definitions
+
+include definitions.mk
+
+include $(ROOT)/global.mk
+
+OBJECTS    := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.o))
+DEPS       := $(foreach file, $(SRC), $(PWD)/$(file:.cpp=.d))
+
+###########################################################################
+## all
+
+all : depend compile link
+
+
+###########################################################################
+## dependencies
+
+depend : $(DEPS)
+
+$(PWD)/%.d : %.cpp
+	@echo Create dependencies for $<
+	@$(SHELL) -ec '$(CXX) -M $(CXXFLAGS) $(IDIR) $< \
+                       | sed -e "s!$*\.o!$(PWD)\/$*\.o!1" > .tmpfile; \
+                       cp -f .tmpfile $@;'
+
+###########################################################################
+## compile
+
+compile : $(OBJECTS)
+
+$(PWD)/%.o: %.cpp
+	@echo Compile $<
+	$(CXX) $(CXXFLAGS) $(IDIR) -c $< -o $@
+
+###########################################################################
+## clean
+
+clean : cleanrub cleanobj cleandep
+
+cleanrub:
+	@echo Clean rubbish files
+	@rm -f *~ core .tmpfile tmp/*.* $(OUTPUT)
+	@rm -f tmp/vtkData/*.* tmp/vtkData/data/*.* tmp/imageData/*.* tmp/gnuplotData/*.* tmp/gnuplotData/data/*.*
+
+cleanobj:
+	@echo Clean object files
+	@rm -f $(OBJECTS)
+
+cleandep:
+	@echo Clean dependencies files
+	@rm -f $(DEPS)
+
+cleanbuild:
+	@cd $(ROOT); \
+	 $(MAKE) cleanlib;
+
+###########################################################################
+## update lib
+
+$(ROOT)/$(LIBDIR)/lib$(LIB).a :
+	@cd $(ROOT); \
+	$(MAKE) all
+
+###########################################################################
+## link
+
+link: $(OUTPUT)
+
+$(OUTPUT): $(OBJECTS) $(ROOT)/$(LIBDIR)/lib$(LIB).a
+	@echo Link $@
+	$(CXX) $(foreach file, $(SRC), $(file:.cpp=.o)) $(LDFLAGS) -L$(ROOT)/$(LIBDIR) -l$(LIB) -lz -o $@
+
+###########################################################################
+## include dependencies
+
+ifneq "$(strip $(wildcard *.d))" ""
+   include $(foreach file,$(DEPS),$(file))
+endif
+
+###########################################################################
+###########################################################################
diff --git a/examples/porousMedia/porousPoiseuille3d/definitions.mk b/examples/porousMedia/porousPoiseuille3d/definitions.mk
new file mode 100644
index 0000000..6dcc037
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille3d/definitions.mk
@@ -0,0 +1,30 @@
+#  This file is part of the OpenLB library
+#
+#  Copyright (C) 2007 Mathias Krause
+#  E-mail contact: info@openlb.net
+#  The most recent release of OpenLB can be downloaded at
+#  <http://www.openlb.net/>
+#
+#  This program is free software; you can redistribute it and/or
+#  modify it under the terms of the GNU General Public License
+#  as published by the Free Software Foundation; either version 2
+#  of the License, or (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public
+#  License along with this program; if not, write to the Free
+#  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+#  Boston, MA  02110-1301, USA.
+
+
+###########################################################################
+###########################################################################
+## DEFINITIONS TO BE CHANGED
+
+ROOT            := ../../..
+SRC             := porousPoiseuille3d.cpp
+OUTPUT          := porousPoiseuille3d
diff --git a/examples/porousMedia/porousPoiseuille3d/module.mk b/examples/porousMedia/porousPoiseuille3d/module.mk
new file mode 100644
index 0000000..1190482
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille3d/module.mk
@@ -0,0 +1,29 @@
+#  This file is part of the OpenLB library
+#
+#  Copyright (C) 2017 Markus Mohrhard
+#  E-mail contact: info@openlb.net
+#  The most recent release of OpenLB can be downloaded at
+#  <http://www.openlb.net/>
+#
+#  This program is free software; you can redistribute it and/or
+#  modify it under the terms of the GNU General Public License
+#  as published by the Free Software Foundation; either version 2
+#  of the License, or (at your option) any later version.
+#
+#  This program is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public
+#  License along with this program; if not, write to the Free
+#  Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+#  Boston, MA  02110-1301, USA.
+
+current_dir := $(dir $(word $(words $(MAKEFILE_LIST)),$(MAKEFILE_LIST)))
+
+include global.mk
+include rules.mk
+include $(addsuffix definitions.mk, $(current_dir))
+
+$(eval $(call sample,$(current_dir)$(OUTPUT),$(addprefix $(current_dir), $(SRC))))
diff --git a/examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp b/examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp
new file mode 100644
index 0000000..01a7a62
--- /dev/null
+++ b/examples/porousMedia/porousPoiseuille3d/porousPoiseuille3d.cpp
@@ -0,0 +1,484 @@
+/*  Lattice Boltzmann sample, written in C++, using the OpenLB
+ *  library
+ *
+ *  Copyright (C) 2019 Fabian Klemens, Marc Haußmann
+ *  Mathias J. Krause, Vojtech Cvrcek, Peter Weisbrod
+ *  E-mail contact: info@openlb.net
+ *  The most recent release of OpenLB can be downloaded at
+ *  <http://www.openlb.net/>
+ *
+ *  This program is free software; you can redistribute it and/or
+ *